Figure out sample merging
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wontfix
- Dominant language
- Rust
- Stars
- 3
- Forks
- 0
- Avg merge
- 1d 14h
- Merged PRs (30d)
- 2
Description
Sample merging is quite simple. And we can also probably easily implement it with pandas group_by, the only issue is aggregating multiple samples into lists. It doesn't seem to want to work the way I expected; it makes everything a list.
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
No file, test, or entry point is named. Start by locating the sample-merging implementation in peprs and clarify the intended output when multiple samples are aggregated, especially whether fields should become lists; done means that behavior is specified and verified.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- pandas, rust
- Domain
- bioinformatics, data-engineering
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100