owlcollab / owlcollab/owltools
Feature to check whether an OBO ontology is a DAG
Nobody has claimed this yet.
- Dominant language
- Java
- Stars
- 115
- Forks
- 34
- PR merge metrics
- No merged PRs in 30d
Description
From dosu...@gmail.com on July 29, 2013 06:21:04
I'd like to use OWLtools to check whether an ontology is a DAG - failing if it is not. If this is already possible, please could it be documented. If not, please could this feature be added.
(OORT has one likely looking option: '--run-obo-basic-dag-check'. But I've been unable to find a way to get this to do anything. )
Original issue: http://code.google.com/p/owltools/issues/detail?id=76
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Inspect OORT's --run-obo-basic-dag-check option and any existing documentation or invocation path; determine whether it currently performs the requested OBO DAG validation. Done means either documenting a working usage or adding the feature so a non-DAG ontology fails the check, with a reproducible command or test.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100