owlcollab / owlcollab/owltools

Print class axioms using manchester syntax

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enhancement imported
Dominant language
Java
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Forks
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Description

From josemigu...@gmail.com on May 17, 2013 08:04:32

Add an option similar to --list-class-axioms that prints out the class axioms in manchester syntax.

For example for the class http://purl.obolibrary.org/obo/UBERON_0002102 ('forelimb') generate the following output:

'forelimb' subClassOf 'develops_from' some 'forelimb bud'

as opposed to --list-class-axioms current output:
SubClassOf(UBERON:0002102 'forelimb' ObjectSomeValuesFrom(develops_from 'develops_from' UBERON:0005417 'forelimb bud'))

Original issue: http://code.google.com/p/owltools/issues/detail?id=63

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  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the existing --list-class-axioms option and the code that formats its output. Add a comparable option that prints class axioms in Manchester syntax, using the forelimb example as the expected format; verify the command output against the requested example.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
cli
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
45/100

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