owlcollab / owlcollab/owltools
Oort should generate bridge ontologies from external axioms
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- Java
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Description
From cmung...@gmail.com on May 28, 2012 18:43:18
Add option to Oort to be used in addition to or in place of MIREOT, such that external axioms are stripped from the ontology after reasoning, and placed in bridge ontologies.
There would be one bridge ontology per external ontology. E.g
- cl-bridge-to-uberon.obo/owl
- cl-bridge-to-pr.obo/owl
Note that equivalence axioms can reference multiple external ontologies. It may be best to place all equivalence axioms that reference at least 1 additional ontology in a single bridge file, e.g. cl-equivs.obo/owl. TBD.
Original issue: http://code.google.com/p/owltools/issues/detail?id=38
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Research direction
Start by locating Oort's option handling and its MIREOT/reasoning workflow. Define how external axioms are stripped and emitted into bridge ontologies, including the unresolved case where equivalence axioms reference multiple external ontologies; done should include the requested bridge files and settled behavior for that case.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100