owlcollab / owlcollab/owltools
Feature request: Need simple IC score generation
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- Dominant language
- Java
- Stars
- 115
- Forks
- 34
- PR merge metrics
- No merged PRs in 30d
Description
In good old swiss army knife fashion, i relatively urgently need a command that generates the IC scores or some input ontology. So ontology in, table out:
| Class | IC |
|---|---|
| HP:001 | 2.3 |
| HP:002 | 0.1 |
This should complement an existing function that generates the phenodigm scores.
owltools --sim-save-phenodigm-class-scores -m 2.5 -x HP,HP -a scores.txt
Note that during the cause of next year, we will move this stuff to phenol; just not right now, has the human cost is too high.. Would someone be able to do this? Thanks a lot.
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Research direction
Start with the existing owltools --sim-save-phenodigm-class-scores -m 2.5 -x HP,HP -a scores.txt command and trace the function that generates phenodigm scores. Determine where a command for IC scores or an input ontology should enter the CLI. Done means ontology input produces a table containing each class and its IC score, complementing the existing score output.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- bioinformatics, cli
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100