owlcollab / owlcollab/owltools
Change merge equivalence sets behavior
Open
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- Dominant language
- Java
- Stars
- 115
- Forks
- 34
- PR merge metrics
- No merged PRs in 30d
Description
For background see https://github.com/monarch-initiative/monarch-disease-ontology/issues/249
add xrefs for equivalence pairs; remove source xrefs between named classes.
This will allow obof consumers of mondo to use xrefs as a proxy
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Read the background issue at monarch-initiative/monarch-disease-ontology#249, then trace the merge equivalence sets behavior in OWLTools. Done means equivalence pairs have xrefs, source xrefs between named classes are removed, and OBO consumers can use those xrefs as a proxy.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- bioinformatics, tooling
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100