owlcollab / owlcollab/owltools

Method isOboXRef

Open
#159 0 comments 0 reactions 0 assignees View on GitHub

Nobody has claimed this yet.

Dominant language
Java
Stars
115
Forks
34
PR merge metrics
No merged PRs in 30d

Description

I think that since the update to OWLAPI 4, methods such as getAllOWLClasses also return xrefs, am I correct? Then it would be handy to have a method similar to owltools.graph.OWLGraphWrapperExtended#isOboAltId(OWLEntity) for filtering.

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with owltools.graph.OWLGraphWrapperExtended#isOboAltId(OWLEntity) and inspect how getAllOWLClasses behaves with OWLAPI 4. Determine where an analogous isOboXRef method belongs and verify it can filter the xrefs returned by getAllOWLClasses; done means the method is available with consistent entity-handling behavior.

Written by the indexing model from the issue text.

Assessment

Tech stack
java
Domain
api
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.