owlcollab / owlcollab/owltools
golr loading should guard or at least warn against clobbering
@hdietze is already working on this.
Since Sep 1, 2015.
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- Java
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Description
See https://github.com/geneontology/amigo/issues/240
The golr loader should make sure that GAF A does not overwrite GPI-level metadata from GAF B. This could happen a few ways. We could use metadata in each GAF that specifies whether the GAF is an authoritative source of metadata for entities in itself GAF (by default they are; but Reactome would be declared not authoritative for UniProtKB)
At least the loader should keep a cache of IDs loaded, and if the same ID is loaded in a second set then it should report. This will make investigating https://github.com/geneontology/amigo/issues/240 easier
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