owlcollab / owlcollab/owltools
Extracting cross-references from ontology and saving to a tsv
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- Dominant language
- Java
- Stars
- 115
- Forks
- 34
- PR merge metrics
- No merged PRs in 30d
Description
What command can I use to extract the value for xref tags from terms and save the results to a tsv? The tsv would preferably contain the following columns: term_id, term_name, xref. More generally, I am interested in extracting tag-value pairs from ontologies using owltools.
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Research direction
Start with owltools' command-line documentation and existing extraction commands, then check how xref values are represented. Done means identifying a command or documenting whether term_id, term_name, and xref can be emitted as TSV columns; the issue names no files or tests to run.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- data, tooling
- Issue type
- Documentation
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100