owlcollab / owlcollab/owltools
Add examples for gene_ontology_ext.obo
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- Dominant language
- Java
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- 115
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Description
From cmung...@gmail.com on May 26, 2011 12:09:28
Add an examples/ dir plus some example java code. these should focus on GO.
E.g.
load an ontology
find the name by ID
find an OWLClass by name
getting sub and superclasses using OWLAPI
traversing owlgraph using owltools
getting obo non-logical properties (syns, defs, etc)
advanced:
using reasoning
taxon constraints
Original issue: http://code.google.com/p/owltools/issues/detail?id=1
Contributor guide
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First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the requested examples/ directory and the existing Java entry points for loading ontologies and querying OWLTools. Cover the listed GO operations, including OWLAPI class lookup, subclass and superclass traversal, owltools traversal, and OBO properties; treat reasoning and taxon constraints as advanced examples. Done means the examples/ directory contains runnable Java examples for the requested workflows.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- java
- Domain
- bioinformatics, tooling
- Issue type
- Documentation
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100