oracle / oracle/graalpython

Installation of mlflow is not working

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@cosminbasca is already working on this.

Since Jun 6, 2022.

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Description

Hi! I'm trying to install mlflow package in virtual environment, but installation process fails with error.

bin/pip install mlflow
      compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/mnt/sda2/graalvm-ce-java11-22.1.0/venv/include -I/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/include -c'
      graalvm-native-clang: _configtest.c
      success!
      removing: _configtest.c _configtest.o _configtest.o.d
      C compiler: /mnt/sda2/graalvm-ce-java11-22.1.0/languages/llvm/native/bin/graalvm-native-clang -Wno-unused-command-line-argument -stdlib=libc++ -DNDEBUG -DGRAALVM_PYTHON_LLVM -D_GNU_SOURCE=1 -fPIC
  
      compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/mnt/sda2/graalvm-ce-java11-22.1.0/venv/include -I/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/include -c'
      graalvm-native-clang: _configtest.c
      C compiler: /mnt/sda2/graalvm-ce-java11-22.1.0/languages/llvm/native/bin/graalvm-native-clang -Wno-unused-command-line-argument -stdlib=libc++ -DNDEBUG -DGRAALVM_PYTHON_LLVM -D_GNU_SOURCE=1 -fPIC
  
      compile options: '-Inumpy/core/src/common -Inumpy/core/src -Inumpy/core -Inumpy/core/src/npymath -Inumpy/core/src/multiarray -Inumpy/core/src/umath -Inumpy/core/src/npysort -I/mnt/sda2/graalvm-ce-java11-22.1.0/venv/include -I/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/include -c'
      graalvm-native-clang: _configtest.c
      /mnt/sda2/graalvm-ce-java11-22.1.0/languages/llvm/native/bin/graalvm-native-clang _configtest.o -o _configtest
      removing: _configtest.c _configtest.o _configtest.o.d _configtest.c _configtest.o _configtest.o.d _configtest
      Traceback (most recent call last):
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/core/setup_common.py", line 263, in check_long_double_representation
          ltype = long_double_representation(pyod(obj))
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/core/setup_common.py", line 417, in long_double_representation
          raise ValueError("Could not lock sequences (%s)" % saw)
      ValueError: Could not lock sequences (None)
  
      During handling of the above exception, another exception occurred:
  
      Traceback (most recent call last):
        File "<string>", line 1, in <module>
        File "/tmp/pip-install-y2c51dyc/numpy/setup.py", line 443, in <module 'setup.py'>
          setup_package()
        File "/tmp/pip-install-y2c51dyc/numpy/setup.py", line 435, in setup_package
          setup(**metadata)
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/distutils/core.py", line 171, in setup
          return old_setup(**new_attr)
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/venv/lib/python3.8/site-packages/setuptools/__init__.py", line 144, in setup
          return distutils.core.setup(**attrs)
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/core.py", line 148, in setup
          dist.run_commands()
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/dist.py", line 966, in run_commands
          self.run_command(cmd)
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/dist.py", line 985, in run_command
          cmd_obj.run()
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/distutils/command/install.py", line 62, in run
          r = self.setuptools_run()
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/distutils/command/install.py", line 36, in setuptools_run
          return distutils_install.run(self)
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/command/install.py", line 557, in run
          self.run_command('build')
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/cmd.py", line 313, in run_command
          self.distribution.run_command(command)
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/dist.py", line 985, in run_command
          cmd_obj.run()
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/distutils/command/build.py", line 47, in run
          old_build.run(self)
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/command/build.py", line 135, in run
          self.run_command(cmd_name)
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/cmd.py", line 313, in run_command
          self.distribution.run_command(command)
        File "/mnt/sda2/graalvm-ce-java11-22.1.0/languages/python/lib-python/3/distutils/dist.py", line 985, in run_command
          cmd_obj.run()
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/distutils/command/build_src.py", line 142, in run
          self.build_sources()
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/distutils/command/build_src.py", line 159, in build_sources
          self.build_extension_sources(ext)
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/distutils/command/build_src.py", line 316, in build_extension_sources
          sources = self.generate_sources(sources, ext)
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/distutils/command/build_src.py", line 369, in generate_sources
          source = func(extension, build_dir)
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/core/setup.py", line 463, in generate_config_h
          rep = check_long_double_representation(config_cmd)
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/core/setup_common.py", line 273, in check_long_double_representation
          ltype = long_double_representation(pyod("_configtest"))
        File "/tmp/pip-install-y2c51dyc/numpy/numpy/core/setup_common.py", line 417, in long_double_representation
          raise ValueError("Could not lock sequences (%s)" % saw)
      ValueError: Could not lock sequences (None)
      ----------------------------------------
  ERROR: Command errored out with exit status 1: /mnt/sda2/graalvm-ce-java11-22.1.0/venv/bin/graalpython -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-y2c51dyc/numpy/setup.py'"'"'; __file__='"'"'/tmp/pip-install-y2c51dyc/numpy/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-ltkrwdk9/install-record.txt --single-version-externally-managed --prefix /tmp/pip-build-env-jkuo6tgu/overlay --compile --install-headers /mnt/sda2/graalvm-ce-java11-22.1.0/venv/include/site/python3.8/numpy Check the logs for full command output.
  WARNING: You are using pip version 20.1.1; however, version 22.1.2 is available.
  You should consider upgrading via the '/mnt/sda2/graalvm-ce-java11-22.1.0/venv/bin/graalpython -m pip install --upgrade pip' command.
  ----------------------------------------
ERROR: Command errored out with exit status 1: /mnt/sda2/graalvm-ce-java11-22.1.0/venv/bin/graalpython /mnt/sda2/graalvm-ce-java11-22.1.0/venv/lib/python3.8/site-packages/pip install --ignore-installed --no-user --prefix /tmp/pip-build-env-jkuo6tgu/overlay --no-warn-script-location --no-binary :none: --only-binary :none: -i https://pypi.org/simple -- 'wheel<0.38.0' 'setuptools<60.0.0' 'Cython>=0.29.18,<3.0' 'pybind11>=2.4.3,<2.9.0' 'pythran>=0.10.0,<0.11.0' 'numpy==1.19.2; python_version=='"'"'3.8'"'"' and platform_machine=='"'"'aarch64'"'"' and platform_python_implementation != '"'"'PyPy'"'"'' 'numpy==1.20.0; python_version=='"'"'3.8'"'"' and platform_machine=='"'"'arm64'"'"' and platform_system=='"'"'Darwin'"'"'' 'numpy==1.20.0; python_version=='"'"'3.9'"'"' and platform_machine=='"'"'arm64'"'"' and platform_system=='"'"'Darwin'"'"'' 'numpy==1.17.5; python_version=='"'"'3.8'"'"' and platform_machine=='"'"'s390x'"'"' and platform_python_implementation != '"'"'PyPy'"'"'' 'numpy==1.17.3; python_version=='"'"'3.8'"'"' and (platform_machine!='"'"'arm64'"'"' or platform_system!='"'"'Darwin'"'"') and platform_machine!='"'"'aarch64'"'"' and platform_machine!='"'"'s390x'"'"' and platform_python_implementation != '"'"'PyPy'"'"'' 'numpy==1.19.3; python_version=='"'"'3.9'"'"' and (platform_machine!='"'"'arm64'"'"' or platform_system!='"'"'Darwin'"'"') and platform_python_implementation != '"'"'PyPy'"'"'' 'numpy==1.21.4; python_version=='"'"'3.10'"'"' and platform_python_implementation != '"'"'PyPy'"'"'' 'numpy; python_version>='"'"'3.11'"'"'' 'numpy; python_version>='"'"'3.8'"'"' and platform_python_implementation=='"'"'PyPy'"'"'' Check the logs for full command output.

I'm using last graalvm version 22.1.0. Am I doing something wrong or mlflow is just not supported?

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