DeprecationWarning: The argument `dtypes` for `read_csv` is deprecated.
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 129
- Forks
- 34
- PR merge metrics
- No merged PRs in 30d
Description
site-packages\gtfparse\read_gtf.py:106: DeprecationWarning: The argument `dtypes` for `read_csv` is deprecated. It has been renamed to `schema_overrides`.
df = polars.read_csv(
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start in gtfparse/read_gtf.py around lines 99-109, where the read_csv call emits the reported DeprecationWarning. Inspect that call and verify that the warning is no longer produced when parsing a GTF file; the issue is done when this deprecated argument warning is resolved.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 1/5
- Estimated time
- Under an hour
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 48/100