read_gtf has ERROR "scan_csv() got an unexpected keyword argument 'sep'"
Open
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 129
- Forks
- 34
- PR merge metrics
- No merged PRs in 30d
Description
I use the function “read_gtf”，but it gives me error"scan_csv() got an unexpected keyword argument 'sep'"
my code is :
df = read_gtf('./Homo_sapiens.GRCh38.93.chr.gtf')
df
Contributor guide
No contributing guide indexed for this repository
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at the read_gtf entry point and reproduce the reported scan_csv() unexpected keyword argument 'sep' error with the Homo_sapiens.GRCh38.93.chr.gtf input. Trace the call into the CSV-scanning path; done means read_gtf processes the example file without this error and the behavior is covered by a regression test.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- bioinformatics
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100