opensafely-core / opensafely-core/sysadmin

Dependabot not able to create PRs for security updates

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Description

The job-runner repo currently has one open dependabot PR for pip, but there are currently multiple queued python package updates with security issues including certifi, urllib3, .... Looking at certifi as an example, dependabot is apparently unable to create a PR (see below).

Maybe we should

  • monitor open dependabot security issues on the dashboard, as well as open dependabot PRs
  • do a survey of repositories with blocked security issues like this
  • fix all affected repositories

  proxy | 2023/12/06 11:02:27 proxy starting, commit: 6cffd6fae1b2f713f2d837bc45fe916f855c821d
  proxy | 2023/12/06 11:02:27 Listening (:1080)
updater | 2023-12-06T11:02:27.776132078 [759114296:main:WARN:src/devices/src/legacy/serial.rs:222] Detached the serial input due to peer close/error.
updater | time="2023-12-06T11:02:29Z" level=info msg="guest starting" commit=17df297b9449ef5936111b658329653bcfc0c9bc
updater | time="2023-12-06T11:02:29Z" level=info msg="starting job..." fetcher_timeout=10m0s job_id=759114296 updater_timeout=45m0s updater_version=500188dd3d1d145626d55c8281aef7d7dae974c1-pip
updater | 2023/12/06 11:02:31 INFO Raven 3.1.2 ready to catch errors
updater | 2023/12/06 11:02:32 INFO <job_759114296> Starting job processing
  proxy | 2023/12/06 11:02:33 [002] GET https://github.com:443/opensafely-core/job-runner/info/refs?service=git-upload-pack
  proxy | 2023/12/06 11:02:33 [002] * authenticating git server request (host: github.com)
  proxy | 2023/12/06 11:02:33 [002] 200 https://github.com:443/opensafely-core/job-runner/info/refs?service=git-upload-pack
  proxy | 2023/12/06 11:02:33 [003] POST https://github.com:443/opensafely-core/job-runner/git-upload-pack
  proxy | 2023/12/06 11:02:33 [003] * authenticating git server request (host: github.com)
  proxy | 2023/12/06 11:02:33 [003] 200 https://github.com:443/opensafely-core/job-runner/git-upload-pack
  proxy | 2023/12/06 11:02:33 [004] POST https://github.com:443/opensafely-core/job-runner/git-upload-pack
  proxy | 2023/12/06 11:02:33 [004] * authenticating git server request (host: github.com)
  proxy | 2023/12/06 11:02:33 [004] 200 https://github.com:443/opensafely-core/job-runner/git-upload-pack
updater | 2023/12/06 11:02:33 INFO <job_759114296> Finished job processing
updater | time="2023-12-06T11:02:33Z" level=info msg="task complete" container_id=job-759114296-file-fetcher exit_code=0 job_id=759114296 step=fetcher
updater | 2023/12/06 11:02:34 INFO Raven 3.1.2 ready to catch errors
updater | 2023/12/06 11:02:36 INFO <job_759114296> Starting job processing
updater | 2023/12/06 11:02:42 INFO <job_759114296> Starting security update job for opensafely-core/job-runner
updater | 2023/12/06 11:02:42 INFO <job_759114296> Checking if certifi 2020.11.8 needs updating
  proxy | 2023/12/06 11:02:42 [012] GET https://pypi.org:443/simple/certifi/
  proxy | 2023/12/06 11:02:42 [012] 200 https://pypi.org:443/simple/certifi/
updater | 2023/12/06 11:02:42 INFO <job_759114296> Latest version is 2023.11.17
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  proxy | 2023/12/06 11:02:47 [035] GET https://pypi.org:443/simple/pytest-cov/
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  proxy | 2023/12/06 11:02:54 [135] 200 https://files.pythonhosted.org:443/packages/cd/f1/ba7dee3de0e9d3b8634d6fbaa5d0d407a7da64620305d147298b683e5c36/filelock-3.6.0-py3-none-any.whl
  proxy | 2023/12/06 11:02:54 [136] GET https://pypi.org:443/simple/pyparsing/
  proxy | 2023/12/06 11:02:54 [136] 200 https://pypi.org:443/simple/pyparsing/
  proxy | 2023/12/06 11:02:55 [137] GET https://files.pythonhosted.org:443/packages/80/c1/23fd82ad3121656b585351aba6c19761926bb0db2ebed9e4ff09a43a3fcc/pyparsing-3.0.7-py3-none-any.whl
  proxy | 2023/12/06 11:02:55 [137] 200 https://files.pythonhosted.org:443/packages/80/c1/23fd82ad3121656b585351aba6c19761926bb0db2ebed9e4ff09a43a3fcc/pyparsing-3.0.7-py3-none-any.whl
  proxy | 2023/12/06 11:02:55 [138] GET https://files.pythonhosted.org:443/packages/ec/6b/63cc3df74987c36fe26157ee12e09e8f9db4de771e0f3404263117e75b95/typing_extensions-4.7.1-py3-none-any.whl
  proxy | 2023/12/06 11:02:55 [138] 200 https://files.pythonhosted.org:443/packages/ec/6b/63cc3df74987c36fe26157ee12e09e8f9db4de771e0f3404263117e75b95/typing_extensions-4.7.1-py3-none-any.whl
updater | 2023/12/06 11:02:55 INFO <job_759114296> Requirements to unlock update_not_possible
updater | 2023/12/06 11:02:55 INFO <job_759114296> Requirements update strategy bump_versions
updater | 2023/12/06 11:02:55 INFO <job_759114296> The latest possible version of certifi that can be installed is 2020.11.8
updater | 2023/12/06 11:02:55 INFO <job_759114296> The earliest fixed version is 2023.7.22.
updater | 2023/12/06 11:02:56 INFO <job_759114296> Finished job processing
updater | 2023/12/06 11:02:56 INFO Results:
updater | Dependabot encountered '1' error(s) during execution, please check the logs for more details.
updater | +------------------------------+
updater | |            Errors            |
updater | +------------------------------+
updater | | security_update_not_possible |
updater | +------------------------------+
updater | time="2023-12-06T11:02:56Z" level=info msg="task complete" container_id=job-759114296-updater exit_code=0 job_id=759114296 step=updater

Contributor guide

No contributing guide indexed for this repository

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start with the linked job-runner Dependabot dashboard, the certifi update log, and the open pip pull request to establish why security updates are queued rather than proposed. Survey repositories with blocked security issues, then define whether the completed work is monitoring, repository fixes, or both; done should mean affected issues are addressed and the chosen monitoring scope is documented.

Written by the indexing model from the issue text.

Assessment

Tech stack
github, python
Domain
devops, infrastructure, security
Issue type
Bug
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
30/100

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