opencobra / opencobra/COBRA.tutorials
Incorrect Output of iMAT reconstruction in the tutorial
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Description
Hi, I have followed the steps as per the tutorial to create iMAT reconstruction of the ecoli_core_model.mat. The output is very different from what is provided in the documentation.
I have rechecked with the latest version of the toolbox. I am consistently getting different output with different solvers too. I have attached the output what I am getting.
Do have a look at this. Do run the tutorial once again. There were some changes made to the iMAT after the last update of this tutorial. The final optimal solution after solving the MILP is different from the output in the tutorial.
The output I got here.
Thanks.
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Research direction
Run the tutorialExtractionTranscriptomic tutorial linked in the issue and compare its iMAT reconstruction output with the documented result and the attached paste. Check the current iMAT behavior with the available solvers. The work is done when the tutorial output and documentation consistently reflect the current toolbox behavior.
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Assessment
- Tech stack
- matlab
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- documentation
- Issue type
- Documentation
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- 35/100