Codex tried to reset my yubikey credentials because I asked it to disable the pin code feature
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Description
What version of Codex CLI is running?
codex-cli 0.154.0
What subscription do you have?
personal
Which model were you using?
gpt-5.6-luna low
What platform is your computer?
Darwin 25.6.0 arm64 arm
What terminal emulator and version are you using (if applicable)?
Terminal.app Version 2.15 (470.2)
Codex doctor report
{
"schemaVersion": 1,
"generatedAt": "1789315775s since unix epoch",
"overallStatus": "warning",
"codexVersion": "0.154.0",
"checks": {
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"id": "app_server.status",
"category": "app-server",
"status": "ok",
"summary": "background server is not running",
"details": {
"control socket": "/Users/anders/.codex/app-server-control/app-server-control.sock",
"daemon state dir": "/Users/anders/.codex/app-server-daemon",
"mode": "ephemeral",
"pid file": "/Users/anders/.codex/app-server-daemon/app-server.pid (missing)",
"settings": "/Users/anders/.codex/app-server-daemon/settings.json (missing)",
"status": "not running",
"update-loop pid file": "/Users/anders/.codex/app-server-daemon/app-server-updater.pid (missing)"
},
"remediation": null,
"durationMs": 0
},
"auth.credentials": {
"id": "auth.credentials",
"category": "auth",
"status": "ok",
"summary": "auth is configured",
"details": {
"auth file": "/Users/anders/.codex/auth.json",
"auth storage mode": "File",
"stored API key": "false",
"stored ChatGPT tokens": "true",
"stored agent identity": "false",
"stored auth mode": "chatgpt"
},
"remediation": null,
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"version": "26.908.40834"
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"summary": "no desktop app-server handshake was recorded",
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"install context": "standalone (unix, package /Users/anders/.codex/packages/standalone/releases/0.154.0-aarch64-apple-darwin, bin /Users/anders/.codex/packages/standalone/releases/0.154.0-aarch64-apple-darwin/bin, resources /Users/anders/.codex/packages/standalone/releases/0.154.0-aarch64-apple-darwin/codex-resources, path /Users/anders/.codex/packages/standalone/releases/0.154.0-aarch64-apple-darwin/codex-path)",
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"network.env": {
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"details": {
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"respect system proxy": "disabled",
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"network.provider_reachability": {
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"summary": "active provider endpoints are reachable over HTTP",
"details": {
"ChatGPT inference URL": "https://chatgpt.com/backend-api/<redacted> reachable (HTTP 405)",
"desktop assets CDN": "https://chatgpt.com/backend-api/<redacted> reachable (HTTP 200)",
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"details": {
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"auth mode": "chatgpt",
"connect timeout": "15000 ms",
"endpoint": "wss://chatgpt.com/backend-api/<redacted>",
"handshake result": "HTTP 101 Switching Protocols",
"model provider": "openai",
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},
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"status": "ok",
"summary": "running standalone on macos-aarch64",
"details": {
"commit": "unknown",
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"platform": "macos-aarch64",
"version": "0.154.0"
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"durationMs": 0
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"summary": "search command found (bundled); execution not verified",
"details": {
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"search command readiness": "file exists",
"search provider": "bundled"
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"sandbox.helpers": {
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"details": {
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"codex-linux-sandbox helper": "none",
"denied-read glob rules": "0",
"denied-read rules": "0",
"execve wrapper helper": "/Users/anders/.codex/tmp/arg0/codex-arg0UJXj4h/codex-execve-wrapper",
"filesystem sandbox": "restricted",
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"security.endpoint": {
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"summary": "no supported endpoint protection detected",
"details": {
"endpoint products": "none detected"
},
"remediation": null,
"durationMs": 215
},
"state.paths": {
"id": "state.paths",
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"status": "ok",
"summary": "state paths and databases are inspectable",
"details": {
"CODEX_HOME": "/Users/anders/.codex (dir)",
"active rollout files": "388 files, 3212258386 total bytes, 8279016 average bytes",
"archived rollout files": "88 files, 937836250 total bytes, 10657230 average bytes",
"goals DB": "/Users/anders/.codex/goals_1.sqlite (file)",
"goals DB integrity": "ok",
"log DB": "/Users/anders/.codex/logs_2.sqlite (file)",
"log DB integrity": "ok",
"log dir": "/Users/anders/.codex/log (dir)",
"memories DB": "/Users/anders/.codex/memories_1.sqlite (file)",
"memories DB integrity": "ok",
"queue DB": "/Users/anders/.codex/queue_1.sqlite (file)",
"queue DB integrity": "ok",
"sqlite home": "/Users/anders/.codex (dir)",
"standalone release cache": "6 entries in /Users/anders/.codex/packages/standalone/releases",
"state DB": "/Users/anders/.codex/state_5.sqlite (file)",
"state DB integrity": "ok",
"thread history DB": "/Users/anders/.codex/thread_history_1.sqlite (file)",
"thread history DB integrity": "ok"
},
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"rollout DB missing active sample": [
"/Users/anders/.codex/sessions/2026/08/22/rollout-2026-08-22T17-30-07-01a02a17-f090-72a3-a369-7b69a2cd64ca.jsonl",
"/Users/anders/.codex/sessions/2026/08/31/rollout-2026-08-31T14-16-34-01a057bf-fc2f-7120-bcd0-adf62d13b961.jsonl",
"/Users/anders/.codex/sessions/2026/09/07/rollout-2026-09-07T10-57-05-01a07b15-dd0f-7ad1-86c4-66c7687d6b1d.jsonl",
"/Users/anders/.codex/sessions/2026/09/03/rollout-2026-09-03T17-02-19-01a0672d-a82a-71a2-bb72-3811bf57cc6d_01a067ca-cd12-70e0-b06e-de3a0cfb8dce.jsonl",
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"issues": [
{
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{
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"system.disk": {
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"terminal.title": {
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"terminal title project value": "anders",
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"updates.status": {
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"summary": "update configuration is locally consistent",
"details": {
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"check for update on startup": "true",
"last checked at": "2026-09-13T15:58:31.594027Z",
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}
}
What issue are you seeing?
Hi
I have an yubikey where I had previously enabled the pin code feature, but I wanted to disable it and attached
it and asked codex to try to disable the pin. Apparently the only way to disable the pin is to reset all of the credentials on
the yubikey, and therefore codex concluded that a reset was necessary. I managed to stop it before the reset, but I think
it should report that there is no on/off feature for the pin code instead of doing a wipe.
The yubikey is version NFC (5.7.1) [FIDO], and it is attached to my macbook air M2 through an usb-a -> usb-c connector (since M2 air's don't have a built in nfc reader).
The tool codex used is called ykman.
Anders
What steps can reproduce the bug?
Uploaded thread: 01a09b7d-db6b-7210-8a77-d2dda476697a
What is the expected behavior?
Codex should not try to wipe my yubikey.
Additional information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
The report provides no file or test entry point. Start by reproducing the request against Codex CLI 0.154.0 and trace the action path that interpreted disabling a PIN as resetting YubiKey credentials. Done means the agent safely handles the request without attempting credential-reset actions, with a regression test covering the behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- rust
- Domain
- authentication, cli, security
- Issue type
- Bug
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Active
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100