False positive in development

No source file, failing test, or reproduction steps are named. Start by isolating which Codex doctor warning is the reported false positive, focusing on the state.rollout_db_parity and terminal.env checks in the supplied report; done means the behavior is reproducible and the intended diagnostic result is established.

What version of Codex CLI is running?

0.144.6

What subscription do you have?

Pro 20

Which model were you using?

gpt-5.6-sol

What platform is your computer?

Linux 6.8.0-136-generic x86_64 x86_64

What terminal emulator and version are you using (if applicable)?

tmux

Codex doctor report

{
  "schemaVersion": 1,
  "generatedAt": "1784427515s since unix epoch",
  "overallStatus": "warning",
  "codexVersion": "0.144.6",
  "checks": {
    "app_server.status": {
      "id": "app_server.status",
      "category": "app-server",
      "status": "ok",
      "summary": "background server is not running",
      "details": {
        "control socket": "/home/kunorikiku/.codex/app-server-control/app-server-control.sock",
        "daemon state dir": "/home/kunorikiku/.codex/app-server-daemon",
        "mode": "persistent",
        "pid file": "/home/kunorikiku/.codex/app-server-daemon/app-server.pid (missing)",
        "settings": "/home/kunorikiku/.codex/app-server-daemon/settings.json (file)",
        "status": "not running",
        "update-loop pid file": "/home/kunorikiku/.codex/app-server-daemon/app-server-updater.pid (file)"
      },
      "remediation": null,
      "durationMs": 0
    },
    "auth.credentials": {
      "id": "auth.credentials",
      "category": "auth",
      "status": "ok",
      "summary": "auth is configured",
      "details": {
        "auth file": "/home/kunorikiku/.codex/auth.json",
        "auth storage mode": "File",
        "stored API key": "false",
        "stored ChatGPT tokens": "true",
        "stored agent identity": "false",
        "stored auth mode": "chatgpt"
      },
      "remediation": null,
      "durationMs": 0
    },
    "config.load": {
      "id": "config.load",
      "category": "config",
      "status": "ok",
      "summary": "config loaded",
      "details": {
        "CODEX_HOME": "/home/kunorikiku/.codex",
        "config.toml": "/home/kunorikiku/.codex/config.toml",
        "config.toml parse": "ok",
        "cwd": "/home/kunorikiku",
        "enabled feature flags": "shell_tool, unified_exec, shell_snapshot, code_mode_host, terminal_resize_reflow, sqlite, hooks, enable_request_compression, multi_agent, apps, tool_search_always_defer_mcp_tools, tool_suggest, plugins, in_app_browser, browser_use, browser_use_full_cdp_access, browser_use_external, computer_use, remote_plugin, plugin_sharing, image_generation, resize_all_images, skill_mcp_dependency_install, mentions_v2, steer, guardian_approval, goals, collaboration_modes, tool_call_mcp_elicitation, auth_elicitation, personality, fast_mode, tui_app_server, remote_compaction_v2, workspace_dependencies",
        "feature flag overrides": "none",
        "feature flags enabled": "35",
        "log dir": "/home/kunorikiku/.codex/log",
        "mcp servers": "0",
        "model": "gpt-5.6-sol",
        "model provider": "openai",
        "sqlite home": "/home/kunorikiku/.codex"
      },
      "remediation": null,
      "durationMs": 0
    },
    "git.environment": {
      "id": "git.environment",
      "category": "git",
      "status": "ok",
      "summary": "git version 2.43.0",
      "details": {
        "PATH git #1": "/usr/bin/git",
        "PATH git #2": "/bin/git",
        "PATH git entries": "2",
        "git build options": "git version 2.43.0; cpu: x86_64; no commit associated with this build; sizeof-long: 8; sizeof-size_t: 8; shell-path: /bin/sh",
        "git exec path": "/usr/lib/git-core",
        "git version": "git version 2.43.0",
        "repo detected": "false",
        "selected git": "/usr/bin/git"
      },
      "remediation": null,
      "durationMs": 18
    },
    "installation": {
      "id": "installation",
      "category": "install",
      "status": "ok",
      "summary": "installation looks consistent",
      "details": {
        "PATH codex #1": "/home/kunorikiku/.local/bin/codex",
        "PATH codex #2": "/home/kunorikiku/.local/bin/codex",
        "PATH codex #3": "/usr/bin/codex",
        "PATH codex #4": "/bin/codex",
        "PATH codex entries": "4",
        "current executable": "/home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/bin/codex",
        "install context": "standalone (unix, package /home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl, bin /home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/bin, resources /home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/codex-resources, path /home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/codex-path)",
        "managed by bun": "false",
        "managed by npm": "false",
        "managed by pnpm": "false",
        "managed package root": "not set"
      },
      "remediation": null,
      "durationMs": 0
    },
    "mcp.config": {
      "id": "mcp.config",
      "category": "mcp",
      "status": "ok",
      "summary": "no MCP servers configured",
      "details": {},
      "remediation": null,
      "durationMs": 0
    },
    "network.env": {
      "id": "network.env",
      "category": "network",
      "status": "ok",
      "summary": "network-related environment looks readable",
      "details": {
        "proxy env vars": "none"
      },
      "remediation": null,
      "durationMs": 0
    },
    "network.provider_reachability": {
      "id": "network.provider_reachability",
      "category": "reachability",
      "status": "ok",
      "summary": "active provider endpoints are reachable over HTTP",
      "details": {
        "ChatGPT base URL": "https://chatgpt.com/backend-api/ reachable (HTTP 403)",
        "reachability mode": "ChatGPT auth"
      },
      "remediation": null,
      "durationMs": 509
    },
    "network.websocket_reachability": {
      "id": "network.websocket_reachability",
      "category": "websocket",
      "status": "ok",
      "summary": "Responses WebSocket handshake succeeded",
      "details": {
        "DNS": "1 IPv4, 0 IPv6, first IPv4",
        "auth mode": "chatgpt",
        "connect timeout": "15000 ms",
        "endpoint": "wss://chatgpt.com/backend-api/<redacted>",
        "handshake result": "HTTP 101 Switching Protocols",
        "model provider": "openai",
        "models etag present": "true",
        "provider name": "OpenAI",
        "proxy env vars": "none",
        "reasoning header": "false",
        "server model present": "false",
        "supports websockets": "true",
        "wire API": "responses"
      },
      "remediation": null,
      "durationMs": 909
    },
    "runtime.provenance": {
      "id": "runtime.provenance",
      "category": "runtime",
      "status": "ok",
      "summary": "running standalone on linux-x86_64",
      "details": {
        "commit": "unknown",
        "current executable": "/home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/bin/codex",
        "install method": "standalone (unix, package /home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl, bin /home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/bin, resources /home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/codex-resources, path /home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/codex-path)",
        "platform": "linux-x86_64",
        "version": "0.144.6"
      },
      "remediation": null,
      "durationMs": 0
    },
    "runtime.search": {
      "id": "runtime.search",
      "category": "search",
      "status": "ok",
      "summary": "search is OK (bundled)",
      "details": {
        "search command": "/home/kunorikiku/.codex/packages/standalone/releases/0.144.6-x86_64-unknown-linux-musl/codex-path/rg",
        "search command readiness": "file exists",
        "search provider": "bundled"
      },
      "remediation": null,
      "durationMs": 0
    },
    "sandbox.helpers": {
      "id": "sandbox.helpers",
      "category": "sandbox",
      "status": "ok",
      "summary": "sandbox configuration is readable",
      "details": {
        "approval policy": "Never",
        "codex-linux-sandbox helper": "/home/kunorikiku/.codex/tmp/arg0/codex-arg0AuITql/codex-linux-sandbox",
        "execve wrapper helper": "/home/kunorikiku/.codex/tmp/arg0/codex-arg0AuITql/codex-execve-wrapper",
        "filesystem sandbox": "unrestricted",
        "network sandbox": "enabled"
      },
      "remediation": null,
      "durationMs": 0
    },
    "state.paths": {
      "id": "state.paths",
      "category": "state",
      "status": "ok",
      "summary": "state paths and databases are inspectable",
      "details": {
        "CODEX_HOME": "/home/kunorikiku/.codex (dir)",
        "active rollout files": "498 files, 5602937648 total bytes, 11250878 average bytes",
        "archived rollout files": "10 files, 9427961 total bytes, 942796 average bytes",
        "goals DB": "/home/kunorikiku/.codex/goals_1.sqlite (missing)",
        "goals DB integrity": "skipped (missing)",
        "log DB": "/home/kunorikiku/.codex/logs_2.sqlite (file)",
        "log DB integrity": "ok",
        "log dir": "/home/kunorikiku/.codex/log (dir)",
        "memories DB": "/home/kunorikiku/.codex/memories_1.sqlite (missing)",
        "memories DB integrity": "skipped (missing)",
        "sqlite home": "/home/kunorikiku/.codex (dir)",
        "standalone release cache": "2 entries in /home/kunorikiku/.codex/packages/standalone/releases",
        "state DB": "/home/kunorikiku/.codex/state_5.sqlite (file)",
        "state DB integrity": "ok"
      },
      "remediation": null,
      "durationMs": 552
    },
    "state.rollout_db_parity": {
      "id": "state.rollout_db_parity",
      "category": "threads",
      "status": "warning",
      "summary": "state database thread inventory could not be read",
      "details": {
        "default model provider": "openai",
        "rollout DB active files": "497",
        "rollout DB archived files": "10",
        "rollout DB malformed file names": "0",
        "rollout DB read error": "error returned from database: (code: 1) no such table: threads",
        "rollout DB scan cap reached": "false",
        "rollout DB scan error sample": "/home/kunorikiku/.codex/sessions/2026/05/05/rollout-2026-05-05T07-58-26-019df725-3d65-73e1-94ea-fbfa4ef40f71.jsonl (stream did not contain valid UTF-8)",
        "rollout DB scan errors": "1"
      },
      "issues": [
        {
          "severity": "warning",
          "cause": "state DB thread rows could not be queried",
          "measured": "error returned from database: (code: 1) no such table: threads",
          "expected": "readable threads table",
          "remedy": null,
          "fields": []
        }
      ],
      "remediation": null,
      "durationMs": 91060
    },
    "system.environment": {
      "id": "system.environment",
      "category": "system",
      "status": "ok",
      "summary": "OS language en-US",
      "details": {
        "EDITOR": "not set",
        "LANG": "en_US.UTF-8",
        "VISUAL": "not set",
        "os": "Ubuntu 24.4.0 (noble) [64-bit]",
        "os language": "en-US",
        "os type": "Ubuntu",
        "os version": "24.4.0"
      },
      "remediation": null,
      "durationMs": 5
    },
    "terminal.env": {
      "id": "terminal.env",
      "category": "terminal",
      "status": "warning",
      "summary": "width 76 cols - output may wrap (recommended >=80)",
      "details": {
        "SSH_CLIENT": "present",
        "SSH_CONNECTION": "present",
        "SSH_TTY": "present",
        "TERM": "xterm-256color",
        "color output": "enabled",
        "effective locale": "en_US.UTF-8",
        "stderr is terminal": "true",
        "stdin is terminal": "true",
        "stdout is terminal": "true",
        "terminal": "unknown",
        "terminal size": "76x35"
      },
      "issues": [
        {
          "severity": "warning",
          "cause": "width 76 cols - output may wrap (recommended >=80)",
          "measured": "76 x 35",
          "expected": ">= 80 columns",
          "remedy": "resize the window to at least 80 columns",
          "fields": [
            "terminal size"
          ]
        }
      ],
      "remediation": null,
      "durationMs": 0
    },
    "terminal.title": {
      "id": "terminal.title",
      "category": "title",
      "status": "ok",
      "summary": "terminal title default",
      "details": {
        "terminal title activity": "true",
        "terminal title items": "activity, project-name",
        "terminal title project source": "cwd",
        "terminal title project value": "kunorikiku",
        "terminal title source": "default"
      },
      "remediation": null,
      "durationMs": 0
    },
    "updates.status": {
      "id": "updates.status",
      "category": "updates",
      "status": "ok",
      "summary": "update configuration is locally consistent",
      "details": {
        "cached latest version": "0.144.6",
        "check for update on startup": "true",
        "last checked at": "2026-07-18T22:51:46.544853157Z",
        "latest version": "0.144.6",
        "latest version status": "current version is not older",
        "update action": "standalone installer",
        "version cache": "/home/kunorikiku/.codex/version.json"
      },
      "remediation": null,
      "durationMs": 1276
    }
  }
}

What issue are you seeing?

I am developing CUDA-related software and while it was tracing API flow to see how segfault occurred, it yielded such issue of false positives of cybersecurity concern - yet none of the development is even tied to web.

What steps can reproduce the bug?

Uploaded thread: 019f7811-4890-7d10-b8d5-032ad7deaf7c

What is the expected behavior?

No response

Additional information

No response