obophenotype / obophenotype/uberon
Refinements to bulk workflow and reporting
Open
Nobody has claimed this yet.
- Dominant language
- Emacs Lisp
- Stars
- 163
- Forks
- 43
- Avg merge
- 1d 17h
- Merged PRs (30d)
- 5
Description
- Add labels to candidates.tsv for faster review
- These should not be reported as errors in "Parent not yet in UBERON; subagent should search OLS4 for correct parent"
- ***-template.tsv - parents that are also added in the template have curie unresolved:... These should instead use the ID being added (although this will break with automated ID assignment on merge & would need a two stage addition).
- Registration skill should not register empty templates
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the candidates.tsv workflow, the ***-template.tsv handling, the reporting for missing UBERON parents, and the registration skill. Review how these areas currently process labels, parent references, error reporting, and empty templates; done means all four checklist items behave as described without introducing unresolved template identifiers.
Written by the indexing model from the issue text.
Assessment
- Domain
- tooling
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100