obophenotype / obophenotype/uberon
Assert that mouth is part of the upper respiratory tract
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- Dominant language
- Emacs Lisp
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- 163
- Forks
- 43
- Avg merge
- 1d 17h
- Merged PRs (30d)
- 5
Description
Uberon term
'upper respiratory tract' (UBERON:0001557)
'mouth' (UBERON:0000165)
Suggested revision of logical definition
'upper respiratory tract' (UBERON:0001557) currently has the assertion "upper respiratory tract has-part some nose"
We would like to add "mouth part-of some upper respiratory tract," however if you want to remain consistent with the above pattern we wouldn't oppose having the inverse of this assertion added to 'upper respiratory tract'.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Locate the ontology axioms for UBERON:0001557 (upper respiratory tract) and UBERON:0000165 (mouth), then compare the existing has-part some nose assertion with the repository's modeling convention. Add the agreed mouth/upper-respiratory-tract relation and run the ontology validation checks, confirming the resulting logical definition contains it.
Written by the indexing model from the issue text.
Assessment
- Domain
- content
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100