obophenotype / obophenotype/uberon
Process batch of muscle term requests from HubMap/HRA
Open
Nobody has claimed this yet.
- Dominant language
- Emacs Lisp
- Stars
- 163
- Forks
- 43
- Avg merge
- 1d 17h
- Merged PRs (30d)
- 5
Description
Input table:
https://github.com/obophenotype/uberon/blob/add-hra-muscular-ntr/src/templates/hra-muscular-reports/input.tsv. (source https://drive.google.com/file/d/13z_Ku6W5iM6HoRTzIsORWKQwFYUS2aXi/view )
- Check for mappings to existing terms
- Check for incorrect parents in table
- Find grouping terms and add using EC patterns
- Research leaf node terms (use wikipedia skill)
- Find leaf node terms and add using standard, flexible robot template covering the various muscle properties in CL + text def - all based on research.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the input.tsv table in the add-hra-muscular-ntr branch, then check each request against existing terms and parent relationships. Use the stated EC-pattern and Wikipedia research steps to identify grouping and leaf terms; done means the mappings and parents are corrected and the required muscle terms have standard templates, logical definitions, and text definitions.
Written by the indexing model from the issue text.
Assessment
- Domain
- content
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 38/100