obophenotype / obophenotype/uberon
Various CHEBI entities asserted as direct subclasses of IC
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- Dominant language
- Emacs Lisp
- Stars
- 163
- Forks
- 43
- Avg merge
- 1d 17h
- Merged PRs (30d)
- 5
Description
Uberon term
It appears latest release is asserting various CHEBI chemical entities, for example glycogen http://purl.obolibrary.org/obo/CHEBI_28087 are direct subclasses of BFO independent continuant...
Bug description
See https://ontobee.org/ontology/rdf/UBERON?iri=http://purl.obolibrary.org/obo/CHEBI_28087
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the latest Uberon release and inspect the CHEBI_28087 RDF shown in the linked Ontobee view, tracing why it is asserted as a direct subclass of BFO independent continuant. Done means the unintended CHEBI assertions are corrected in the release and the resulting RDF no longer shows this incorrect superclass relationship.
Written by the indexing model from the issue text.
Assessment
- Domain
- data
- Issue type
- Bug
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Quiet
- Clarity
- Mostly clear
- Newbie friendliness
- 42/100