obophenotype / obophenotype/uberon

NTR: skeletal terms for early ray-finned fishes (Actinopterygii)

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Description

Preferred term label:
Antopercle

Synonyms
None

Definition (free text, please give PubMed ID)
Paired dermal element anterior to the opercle and posterior to the dermohyal. An antopercle is present in Pteronisculus stensioi, see Nielsen (1942) plate 4 of specimen No. 39.
Reference: Nielsen, E. (1942). Studies on Triassic fishes from East Greenland 1. Glaucolepis and Boreosomus. Palaeozoologica Groenlandica 1, 1–403.

Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon)
dermal bone http://purl.obolibrary.org/obo/UBERON_0008907
‘part of’ some dorsal hyoid arch skeleton http://purl.obolibrary.org/obo/UBERON_0011152

Your nano-attribution (ORCID)
https://orcid.org/0000-0001-7102-362X


Preferred term label:
Dermohyal

Synonyms
antoperculum (related)
antopercular (related)

Definition (free text, please give PubMed ID)
Paired element that is typically fused to the hyomandibula. This element is often referred to as the antoperculum/antopercular but is distinct in being fused to the hyomandibula.
An example of a taxon where the dermohyal is present is Cheirolepis trailli, as figured by Giles et al. (2015) figure 9 of NMS.1956.19.
Reference: Giles, S., Coates, M. I., Garwood, R. J., Brazeau, M. D., Atwood, R., Johanson, Z., & Friedman, M. (2015). Endoskeletal structure in Cheirolepis (Osteichthyes, Actinopterygii), An early ray‐finned fish. Palaeontology, 58(5), 849–870.

Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon)
dermal bone http://purl.obolibrary.org/obo/UBERON_0008907
‘part of’ some dorsal hyoid arch skeleton http://purl.obolibrary.org/obo/UBERON_0011152

Your nano-attribution (ORCID)
https://orcid.org/0000-0001-7102-362X


Preferred term label:
Lateral gular

Synonyms
None

Definition (free text, please give PubMed ID)
Paired dermal elements on the ventral surface of the skull bearing the gular pit line.
Lateral gulars are present in Concentrilepis minnekahtaensis, as shown by
Stack and Gottfried (2022) figure 11 of the ventral piece of FMNH PF 3721.
Reference: Stack, J., & Gottfried, M. D. (2022). A new, exceptionally well-preserved Permian actinopterygian fish from the Minnekahta Limestone of South Dakota, USA. Journal of Systematic Palaeontology, 19(18), 1271–1302.

Parent term (use https://www.ebi.ac.uk/ols/ontologies/uberon)
dermal bone http://purl.obolibrary.org/obo/UBERON_0008907
‘part of’ some ventral hyoid arch skeleton http://purl.obolibrary.org/obo/UBERON_0011153
‘part of’ some dermatocranium http://purl.obolibrary.org/obo/UBERON_0003113

Your nano-attribution (ORCID)
https://orcid.org/0000-0001-7102-362X

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing the three requested terms and their proposed parent relationships in the Uberon ontology through the linked OLS resource. Check the supplied definitions, figures, references, and ORCID attribution for each term. Done means the requests are represented consistently with the stated labels, synonyms, definitions, references, and hierarchy.

Written by the indexing model from the issue text.

Assessment

Domain
content
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
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