obophenotype / obophenotype/uberon
Review thalamus terms and relationship to commonly used terms for human anatomy
Open
Nobody has claimed this yet.
Brain
HDCA
Stale
- Dominant language
- Emacs Lisp
- Stars
- 163
- Forks
- 43
- Avg merge
- 1d 17h
- Merged PRs (30d)
- 5
Description
In the table below user_slabel terms comes from some preliminary work on the HDCA. The rest of the table shows potential mappings
| FMA | FMA_label | s | slabel | user_slabel | Notes |
|---|---|---|---|---|---|
| UBERON:0001897 | dorsal plus ventral thalamus | Thalamus | Should Thalamus map to general term dorsal + ventral thalamus, or just to dorsal thalamus (FMA mapping) | ||
| FMA:62007 | Thalamus | UBERON:0004703 | dorsal thalamus | Thalamus | |
| FMA:62010 | Subthalamus | UBERON:0001900 | ventral thalamus | Prethalamus | Synonym on ventral thalamus, also FMA mapping. Wikipedia has prethalamus as a synonym of subthalamus |
| FMA:62010 | Subthalamus | UBERON:0001900 | ventral thalamus | Subthalamus | FMA name mapping |
Relevant defs/commentary from Uberon:
CC @issueswiithtissues - could you clarify your intent for the term prethalamus?
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
This issue has not been assessed yet.