obophenotype / obophenotype/uberon
Valid Values Questions and Concerns as Pertaining Data Element Harmonization
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Description
As mentioned in a separate issue, the NCI Cancer Research Data Commons (CRDC) Program (https://datacommons.cancer.gov/) is developing data standards for submitting data to the CRDC ecosystem. As part of this effort, the CRDC Data Standards Service (DSS) Team is identifying industry standards that can be leveraged for this harmonization and standardization effort.
In the process of harmonizing the Specimen Anatomic Site data element across multiple repositories, we came across a few questions, which we have documented in Column F of the attached file.
DSS Questions and Concerns for Specimen Anatomic Site VVs.xlsx
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Read the issue and inspect Column F of the attached DSS Questions and Concerns for Specimen Anatomic Site VVs.xlsx. Compare the questions with Uberon's existing specimen anatomic site terms and the CRDC harmonization context; done would require an agreed resolution and any resulting ontology content changes, but the issue does not specify them.
Written by the indexing model from the issue text.
Assessment
- Domain
- content
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100