obophenotype / obophenotype/uberon

Obsolete generic pan-metazoan pharynx

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obsolete Stale
Dominant language
Emacs Lisp
Stars
163
Forks
43
Avg merge
1d 17h
Merged PRs (30d)
5

Description

I don't think a generic pharanx makes sense

  • - obsolete pharynx
  • - keep chordate pharynx (not totally clear if this can be moved up to deut, down to vert, but it's roughly OK)
  • - introduce nematode pharynx
  • - intoduce arthropod pharynx

Also do the same for the pharynx muscle/musculature terms

See #2724

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reviewing issue #2724 and the existing generic, chordate, nematode, and arthropod pharynx terms. Determine the corresponding pharynx muscle and musculature terms that need the same treatment; done means the generic terms are obsolete and the lineage-specific terms and placements are updated consistently.

Written by the indexing model from the issue text.

Assessment

Domain
bioinformatics
Issue type
Refactor
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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