obophenotype / obophenotype/uberon
Bodily fluid label is inncorrect given modelling, need real bodily fluid class, PATO needs a property of a fluid class?
@tgbugs is already working on this.
Since May 2, 2022.
- Dominant language
- Emacs Lisp
- Stars
- 163
- Forks
- 43
- Avg merge
- 1d 17h
- Merged PRs (30d)
- 5
Description
Uberon term
bodily fluid liquid http://purl.obolibrary.org/obo/UBERON_0006314
bodily gas http://purl.obolibrary.org/obo/UBERON_0034873
Bug description
Uberon is missing a bodily fluid class that is a superclass of bodily gas and bodily liquid. The underlying issue is that PATO only has classes for quality of a liquid and quality of a gas (http://purl.obolibrary.org/obo/PATO_0001548 and http://purl.obolibrary.org/obo/PATO_0001547) and needs quality of fluid. This issue is a top level issue to track the three sub issues that will be created.
- change label on http://purl.obolibrary.org/obo/UBERON_0006314
- new term request on PATO for property of fluid https://github.com/pato-ontology/pato/pull/456
- new term request on Uberon for bodily fluid that is superclass for http://purl.obolibrary.org/obo/UBERON_0006314 and http://purl.obolibrary.org/obo/UBERON_0034873
@bdebono
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
This issue has not been assessed yet.