obophenotype / obophenotype/uberon
ZFA and Uberon mappings often differ on relationship type
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@mellybelly is already working on this.
Since Feb 1, 2013.
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Description
following are cases where uberon uses a different relation from ZFA. Note that neither is definitely right nor wrong. Nor is it the case that the relations must match. However, for each substitution type a general pattern should be documented. Explicitly allowed differences can be added as notes on the relationship in Uberon.
develops_from->has_developmental_contribution_from
- ZFA:0000140-pancreas ZFA:0001390-pancreatic bud
- ZFA:0000141-pectoral fin bud ZFA:0001453-pectoral fin field
- ZFA:0000694-ceratobranchial 5 tooth ZFA:0005138-dental organ
- ZFA:0001077-thymus primordium ZFA:0000818-vagal neural crest
- ZFA:0001384-pelvic fin bud ZFA:0001454-pelvic fin field
develops_from->part_of
- ZFA:0001390-pancreatic bud ZFA:0000254-pancreas primordium
part_of->channels_from
- ZFA:0000670-hepatic vein ZFA:0000123-liver
- ZFA:0000670-hepatic vein ZFA:0000123-liver
- ZFA:0000670-hepatic vein ZFA:0000123-liver
- ZFA:0001268-sperm duct ZFA:0000598-testis
part_of->connects
- ZFA:0000680-sinoatrial valve ZFA:0000154-sinus venosus
- ZFA:0000680-sinoatrial valve ZFA:0000471-atrium
- ZFA:0005064-atrioventricular valve ZFA:0000009-cardiac ventricle
- ZFA:0005064-atrioventricular valve ZFA:0000471-atrium
part_of->continuous_with
- ZFA:0001663-cranial nerve root ZFA:0000641-cranial nerve
- ZFA:0001663-cranial nerve root ZFA:0000641-cranial nerve
- ZFA:0001663-cranial nerve root ZFA:0000641-cranial nerve
part_of->develops_from
- ZFA:0001120-neuroectoderm ZFA:0000016-ectoderm
- ZFA:0001178-non neural ectoderm ZFA:0000016-ectoderm
part_of->located_in
- ZFA:0005413-perilymph ZFA:0005459-perilymphatic space
part_of->overlaps
- ZFA:0000123-liver ZFA:0001159-immune system
- ZFA:0000282-sensory system ZFA:0000396-nervous system
- ZFA:0000323-mesethmoid bone ZFA:0001580-neurocranium
- ZFA:0000467-anguloarticular ZFA:0000863-dermatocranium
- ZFA:0000467-anguloarticular ZFA:0001273-ventral mandibular arch
- ZFA:0000514-frontal bone ZFA:0001410-orbital region
- ZFA:0000561-parasphenoid ZFA:0001410-orbital region
- ZFA:0001106-pharyngeal pouch ZFA:0001306-pharyngeal arch
- ZFA:0001227-mandibular arch skeleton ZFA:0001216-splanchnocranium
- ZFA:0001405-ethmoid cartilage ZFA:0001580-neurocranium
- ZFA:0001423-parachordal cartilage ZFA:0000189-otic region
- ZFA:0001423-parachordal cartilage ZFA:0001414-occipital region
- ZFA:0001441-lower rhombic lip ZFA:0000069-rhombomere 6
- ZFA:0001441-lower rhombic lip ZFA:0000153-rhombomere 8
- ZFA:0001441-lower rhombic lip ZFA:0000822-rhombomere 2
- ZFA:0001441-lower rhombic lip ZFA:0000823-rhombomere 5
- ZFA:0001441-lower rhombic lip ZFA:0000948-rhombomere 3
- ZFA:0001441-lower rhombic lip ZFA:0000949-rhombomere 7
- ZFA:0001441-lower rhombic lip ZFA:0001032-rhombomere 4
- ZFA:0001708-cerebellar white matter ZFA:0000100-cerebellum
- ZFA:0005090-hepatic portal vein ZFA:0000123-liver
- ZFA:0005229-optic choroid ZFA:0005567-posterior segment eye
part_of->subclass
- ZFA:0000428-saccule ZFA:0000559-otolith organ
- ZFA:0000652-dorsal root ZFA:0005578-spinal nerve root
- ZFA:0000700-utricle ZFA:0000559-otolith organ
- ZFA:0000705-ventral root ZFA:0005578-spinal nerve root
- ZFA:0000763-floor plate rhombomere 2 ZFA:0001258-floor plate rhombomere region
- ZFA:0000763-floor plate rhombomere 2 ZFA:0001258-floor plate rhombomere region
- ZFA:0000764-floor plate rhombomere 5 ZFA:0001258-floor plate rhombomere region
- ZFA:0000764-floor plate rhombomere 5 ZFA:0001258-floor plate rhombomere region
- ZFA:0000765-floor plate rhombomere 8 ZFA:0001258-floor plate rhombomere region
- ZFA:0000765-floor plate rhombomere 8 ZFA:0001258-floor plate rhombomere region
- ZFA:0000824-roof plate rhombomere 2 ZFA:0001311-roof plate rhombomere region
- ZFA:0000824-roof plate rhombomere 2 ZFA:0001311-roof plate rhombomere region
- ZFA:0000825-roof plate rhombomere 6 ZFA:0001311-roof plate rhombomere region
- ZFA:0000825-roof plate rhombomere 6 ZFA:0001311-roof plate rhombomere region
- ZFA:0000828-roof plate rhombomere 5 ZFA:0001311-roof plate rhombomere region
- ZFA:0000828-roof plate rhombomere 5 ZFA:0001311-roof plate rhombomere region
- ZFA:0000882-floor plate rhombomere 1 ZFA:0001258-floor plate rhombomere region
- ZFA:0000888-floor plate rhombomere 3 ZFA:0001258-floor plate rhombomere region
- ZFA:0000888-floor plate rhombomere 3 ZFA:0001258-floor plate rhombomere region
- ZFA:0000889-floor plate rhombomere 6 ZFA:0001258-floor plate rhombomere region
- ZFA:0000889-floor plate rhombomere 6 ZFA:0001258-floor plate rhombomere region
- ZFA:0000893-floor plate rhombomere 4 ZFA:0001258-floor plate rhombomere region
- ZFA:0000893-floor plate rhombomere 4 ZFA:0001258-floor plate rhombomere region
- ZFA:0000904-floor plate rhombomere 7 ZFA:0001258-floor plate rhombomere region
- ZFA:0000904-floor plate rhombomere 7 ZFA:0001258-floor plate rhombomere region
- ZFA:0000950-roof plate rhombomere 3 ZFA:0001311-roof plate rhombomere region
- ZFA:0000950-roof plate rhombomere 3 ZFA:0001311-roof plate rhombomere region
- ZFA:0000951-roof plate rhombomere 7 ZFA:0001311-roof plate rhombomere region
- ZFA:0000951-roof plate rhombomere 7 ZFA:0001311-roof plate rhombomere region
- ZFA:0001033-roof plate rhombomere 1 ZFA:0001311-roof plate rhombomere region
- ZFA:0001033-roof plate rhombomere 1 ZFA:0001311-roof plate rhombomere region
- ZFA:0001034-roof plate rhombomere 4 ZFA:0001311-roof plate rhombomere region
- ZFA:0001034-roof plate rhombomere 4 ZFA:0001311-roof plate rhombomere region
- ZFA:0001035-roof plate rhombomere 8 ZFA:0001311-roof plate rhombomere region
- ZFA:0001035-roof plate rhombomere 8 ZFA:0001311-roof plate rhombomere region
- ZFA:0001374-atrial myocardium ZFA:0001319-myocardium
- ZFA:0001374-atrial myocardium ZFA:0001319-myocardium
- ZFA:0001499-esophageal epithelium ZFA:0005123-gut epithelium
- ZFA:0001655-pericardial cavity ZFA:0001438-coelom
- ZFA:0001655-pericardial cavity ZFA:0001438-coelom
- ZFA:0005047-hyaloid vein ZFA:0005046-hyaloid vessel
- ZFA:0005058-ventricular epicardium ZFA:0005057-epicardium
- ZFA:0005058-ventricular epicardium ZFA:0005057-epicardium
- ZFA:0005060-trabecular layer of ventricle ZFA:0005059-trabecular layer
- ZFA:0005060-trabecular layer of ventricle ZFA:0005059-trabecular layer
- ZFA:0005061-ventricular myocardium ZFA:0001319-myocardium
- ZFA:0005061-ventricular myocardium ZFA:0001319-myocardium
- ZFA:0005081-internal carotid artery ZFA:0000097-carotid artery
- ZFA:0005124-intestinal epithelium ZFA:0005123-gut epithelium
- ZFA:0005297-cranial blood vessel ZFA:0001267-cranial vasculature
- ZFA:0005298-cranial lymph vessel ZFA:0001267-cranial vasculature
part_of->supplies
- ZFA:0005161-hepatic artery ZFA:0000123-liver
- ZFA:0005161-hepatic artery ZFA:0000123-liver
- ZFA:0005161-hepatic artery ZFA:0000123-liver
part_of->surrounds
- ZFA:0005574-lens capsule ZFA:0000035-lens
- ZFA:0005574-lens capsule ZFA:0000035-lens
- ZFA:0005574-lens capsule ZFA:0000035-lens
subclass->develops_from
- ZFA:0000121-lateral plate mesoderm ZFA:0000041-mesoderm
- ZFA:0001204-axial mesoderm ZFA:0000041-mesoderm
- ZFA:0001206-intermediate mesoderm ZFA:0000041-mesoderm
- ZFA:0005586-renal vesicle ZFA:0005584-developing mesonephric nephron
subclass->develops_into
- ZFA:0005004-aortic arch ZFA:0000005-artery
subclass->part_of
- ZFA:0000012-central nervous system ZFA:0000396-nervous system
- ZFA:0000059-postoptic commissure ZFA:0000338-diencephalic white matter
- ZFA:0000121-lateral plate mesoderm ZFA:0000041-mesoderm
- ZFA:0000142-peripheral nervous system ZFA:0000396-nervous system
- ZFA:0000255-paraxial mesoderm ZFA:0000041-mesoderm
- ZFA:0000818-vagal neural crest ZFA:0000045-neural crest
- ZFA:0001024-trunk neural crest ZFA:0000045-neural crest
- ZFA:0001194-cranial neural crest ZFA:0000045-neural crest
- ZFA:0001204-axial mesoderm ZFA:0000041-mesoderm
- ZFA:0001206-intermediate mesoderm ZFA:0000041-mesoderm
- ZFA:0001362-parapophysis ZFA:0001591-endochondral bone
- ZFA:0001648-cardiac neural crest ZFA:0000045-neural crest
- ZFA:0005046-hyaloid vessel ZFA:0007057-ocular blood vessel
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Assessment
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