obophenotype / obophenotype/uberon
New term requests: imports from FMA
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- Dominant language
- Emacs Lisp
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Description
Creating this term request as per @dosumis's suggestion:
I need the FMA terms in the attached text file (plus related hierarchy) in the HCA application ontology. At the moment, I'm generating a module from FMA and splicing that into my own Uberon slim but it would be much easier for our build process if they were directly in Uberon already and we could just extract them as part of the slim.
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the attached fma_import_manual.txt and the Uberon build process, focusing on the requested FMA terms and related hierarchy for the HCA application ontology. Done means those terms are incorporated directly into Uberon and can be extracted as part of the requested slim.
Written by the indexing model from the issue text.
Assessment
- Domain
- data
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 25/100