[BUG] upgrading to lockfile v2 creates an incomplete lockfile

npm ERR! code EUSAGE
npm ERR! 
npm ERR! `npm ci` can only install packages when your package.json and package-lock.json or npm-shrinkwrap.json are in sync. Please update your lock file with `npm install` before continuing.
npm ERR! 
npm ERR! Invalid: lock file's @babel/core@7.9.0 does not satisfy @babel/core@7.19.6
npm ERR! Missing: @ampproject/remapping@2.2.0 from lock file
npm ERR! Invalid: lock file's @babel/code-frame@7.14.5 does not satisfy @babel/code-frame@7.18.6
npm ERR! Invalid: lock file's @babel/generator@7.15.4 does not satisfy @babel/generator@7.19.6
npm ERR! Invalid: lock file's @babel/helper-compilation-targets@7.15.4 does not satisfy @babel/helper-compilation-targets@7.19.3
npm ERR! Invalid: lock file's @babel/helper-module-transforms@7.15.4 does not satisfy @babel/helper-module-transforms@7.19.6
npm ERR! Invalid: lock file's @babel/helpers@7.15.4 does not satisfy @babel/helpers@7.19.4
npm ERR! Invalid: lock file's @babel/parser@7.15.6 does not satisfy @babel/parser@7.19.6
npm ERR! Invalid: lock file's @babel/template@7.15.4 does not satisfy @babel/template@7.18.10
npm ERR! Invalid: lock file's @babel/traverse@7.15.4 does not satisfy @babel/traverse@7.19.6
npm ERR! Invalid: lock file's @babel/types@7.15.6 does not satisfy @babel/types@7.19.4
npm ERR! Invalid: lock file's json5@2.2.0 does not satisfy json5@2.2.1
npm ERR! Missing: semver@6.3.0 from lock file
npm ERR! Missing: @jridgewell/gen-mapping@0.1.1 from lock file
npm ERR! Missing: @jridgewell/trace-mapping@0.3.17 from lock file
npm ERR! Invalid: lock file's @babel/highlight@7.14.5 does not satisfy @babel/highlight@7.18.6
npm ERR! Missing: @jridgewell/gen-mapping@0.3.2 from lock file
npm ERR! Invalid: lock file's @babel/compat-data@7.15.0 does not satisfy @babel/compat-data@7.19.4
npm ERR! Invalid: lock file's @babel/helper-validator-option@7.14.5 does not satisfy @babel/helper-validator-option@7.18.6
npm ERR! Invalid: lock file's browserslist@4.17.0 does not satisfy browserslist@4.21.4
npm ERR! Missing: @babel/helper-environment-visitor@7.18.9 from lock file
npm ERR! Invalid: lock file's @babel/helper-module-imports@7.15.4 does not satisfy @babel/helper-module-imports@7.18.6
npm ERR! Invalid: lock file's @babel/helper-simple-access@7.15.4 does not satisfy @babel/helper-simple-access@7.19.4
npm ERR! Invalid: lock file's @babel/helper-split-export-declaration@7.15.4 does not satisfy @babel/helper-split-export-declaration@7.18.6
npm ERR! Invalid: lock file's @babel/helper-validator-identifier@7.14.9 does not satisfy @babel/helper-validator-identifier@7.19.1
npm ERR! Invalid: lock file's @babel/helper-function-name@7.15.4 does not satisfy @babel/helper-function-name@7.19.0
npm ERR! Invalid: lock file's @babel/helper-hoist-variables@7.15.4 does not satisfy @babel/helper-hoist-variables@7.18.6
npm ERR! Missing: @babel/helper-string-parser@7.19.4 from lock file
npm ERR! Missing: @jridgewell/set-array@1.1.2 from lock file
npm ERR! Missing: @jridgewell/sourcemap-codec@1.4.14 from lock file
npm ERR! Missing: @jridgewell/resolve-uri@3.1.0 from lock file
npm ERR! Missing: react@17.0.2 from lock file
npm ERR! Missing: react-dom@17.0.2 from lock file
npm ERR! Missing: @babel/core@7.9.0 from lock file
npm ERR! Missing: jquery@3.6.1 from lock file
npm ERR! Missing: popper.js@1.16.1 from lock file
npm ERR! Invalid: lock file's caniuse-lite@1.0.30001257 does not satisfy caniuse-lite@1.0.30001423
npm ERR! Invalid: lock file's electron-to-chromium@1.3.838 does not satisfy electron-to-chromium@1.4.284
npm ERR! Missing: node-releases@2.0.6 from lock file
npm ERR! Missing: update-browserslist-db@1.0.10 from lock file
npm ERR! Missing: scheduler@0.20.2 from lock file
npm ERR! Missing: @babel/core@7.9.0 from lock file
npm ERR! Missing: typescript@4.8.4 from lock file
npm ERR! Missing: picocolors@1.0.0 from lock file
npm ERR! Missing: debug@4.3.4 from lock file
npm ERR! Missing: json5@2.2.1 from lock file
npm ERR! Missing: source-map@0.5.7 from lock file
npm ERR! Missing: ms@2.1.2 from lock file
npm ERR! Missing: bindings@1.5.0 from lock file
npm ERR! Missing: file-uri-to-path@1.0.0 from lock file
npm ERR! Missing: debug@4.3.4 from lock file
npm ERR! Missing: json5@2.2.1 from lock file
npm ERR! Missing: semver@5.7.1 from lock file
npm ERR! Missing: source-map@0.5.7 from lock file
npm ERR! Missing: ms@2.1.2 from lock file
npm ERR! 
npm ERR! Clean install a project
npm ERR! 
npm ERR! Usage:
npm ERR! npm ci
npm ERR! 
npm ERR! Options:
npm ERR! [-S|--save|--no-save|--save-prod|--save-dev|--save-optional|--save-peer|--save-bundle]
npm ERR! [-E|--save-exact] [-g|--global] [--global-style] [--legacy-bundling]
npm ERR! [--omit <dev|optional|peer> [--omit <dev|optional|peer> ...]]
npm ERR! [--strict-peer-deps] [--no-package-lock] [--foreground-scripts]
npm ERR! [--ignore-scripts] [--no-audit] [--no-bin-links] [--no-fund] [--dry-run]
npm ERR! [-w|--workspace <workspace-name> [-w|--workspace <workspace-name> ...]]
npm ERR! [-ws|--workspaces] [--include-workspace-root] [--install-links]
npm ERR! 
npm ERR! aliases: clean-install, ic, install-clean, isntall-clean
npm ERR! 
npm ERR! Run "npm help ci" for more info

npm ERR! A complete log of this run can be found in:
npm ERR!     /home/abex/.npm/_logs/2022-10-24T04_53_55_132Z-debug-0.log