nemow tools

• https://github.com/sizespectrum/therMizer (Phoebe) - Mizer in toolbox, but therMizer is not.
• https://cran.r-project.org/web/packages/phylosem/index.html (Jim T)
• sdmtmb used to model essential fish habitat (Kisei)
• ECOTRAN (Jim R, used in PIFSC and NWFSC)
• Ecopath with ecosim
• HARP (habitat assessment and restoration planning, salmon, NWFSC)
• Dynamic linear models, salmon (https://doi.org/10.1371/journal.pone.0054134)
• CEATTLE (Hake, NWFSC, originally at AFSC) -used also with FEAST in AFSC, a movement model
• J-SCOPE (forecasts of ocean conditions Jan - Aug, https://www.nanoos.org/products/j-scope/home.php)
• GLORYS (climate downscale) example from nemow, note that need linux with root privileges to run workflow
• puget sound integrated modeling framework (project, NWFSC, Chris H and others)
• ACLIM (AFSC) includes a toolbox (not sure of link! also GOA ACLIM exists)
• Rpath has MSE capabilities
• atlantisom R package (NEFSC has this and other R packages, mostly data pkgs)
• hydra (Sarah G)
• CEFI uses MOM6
• EcoEnsemble being used by future seas, maybe some others. A framework for ensembling ecosystem models.
• resource: guidance for using global climate models in the life sciences
• MapCompR - for working with fishmip spatiotemporal map comparisons.
• rceattle
• world ocean atlas, ncei. used in therMizer tutorial

The issue names no file or test. Start by locating the toolbox tool-list template and its JSON model data, then determine which listed resources are intended for inclusion and verify their links. Done means the agreed tools appear in the appropriate toolbox content without broken or uncertain references.