ngless-toolkit / ngless-toolkit/ngless
custom pattern recognition load_fastq_directory
Open
Nobody has claimed this yet.
- Dominant language
- Rust
- Stars
- 152
- Forks
- 23
- PR merge metrics
- No merged PRs in 30d
Description
extend the list of recognized patterns for paired reads (eg. R1/R2) or include optional space holder syntax for paired-end sequencing
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start at the load_fastq_directory entry point and trace how filename patterns are recognized for paired-end reads. Review the existing pattern behavior and determine the intended R1/R2 or placeholder syntax from the issue; done means paired FASTQ files are recognized consistently without breaking existing patterns.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- rust
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 25/100