ngless-toolkit / ngless-toolkit/ngless
Feature request: Filter mapped reads by minimum match fraction
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Rust
- Stars
- 152
- Forks
- 23
- PR merge metrics
- No merged PRs in 30d
Description
select() currently supports an absolute threshold on match size, but user asks if it could support a relative one.
Discussed on the mailing list: https://groups.google.com/g/ngless/c/Vq1fmnS5ZKU
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by locating the select() implementation and review the linked mailing-list discussion for the requested relative threshold semantics. Done means select() can filter mapped reads by minimum match fraction in addition to the existing absolute match-size threshold.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- rust
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 4/5
- Estimated time
- 3-5 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 35/100