nf-core / nf-core/viralintegration
Add viRNAtrap to pipeline
Open
Nobody has claimed this yet.
enhancement
- Dominant language
- Python
- Stars
- 19
- Forks
- 11
- PR merge metrics
- No merged PRs in 30d
Description
Description of feature
This is a placeholder suggestion at the moment - I haven't had a chance to actually try out this tool but came across this alignment-free method to detect expressed viruses in human tumor samples:
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reading the linked Nature paper and the viRNAtrap repository to understand the tool and its requirements. Then inspect the nf-core/viralintegration pipeline structure to identify where this analysis could fit. Done means viRNAtrap is integrated into the pipeline and its results are validated, but the issue does not define specific files or acceptance tests.
Written by the indexing model from the issue text.
Assessment
- Domain
- bioinformatics
- Issue type
- Feature
- Difficulty
- 5/5
- Estimated time
- Over a week
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 20/100