nf-core / nf-core/tools

`--plain-text` for `test` commands

Open
#4,372 0 comments 0 reactions 1 assignee View on GitHub

@JulianFlesch is already working on this.

Since Aug 19, 2026.

enhancement
Dominant language
Python
Stars
322
Forks
255
Avg merge
2d 3h
Merged PRs (30d)
5

Description

Description of feature

modules test and subworkflows test commands currently only support rich output. Plain text output would make it an agent-acessible alternative to directly running nf-test commands. I suggest adding a --plain-text option to these commands, similar to existing lint commands.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Assessment

This issue has not been assessed yet.

Get new issues in your inbox

A short digest of beginner-friendly GitHub issues.