Cannot patch subworkflows if you include a function in it

Description of the bug

If you have a function stored in a Nextflow file:

functions/main.nf:

def helloWorld() {
    println "Hello world!"
}

And then add this function to an existing nf-core subworkflow:

include { helloWorld } from 'functions/main.nf'

workflow TEST {
    ...
    helloWorld()
}

then nf-core modules patch fails as it tries to parse configs:

~/P/genomeassembly index_files• ❱ nf-core subworkflows --git-remote https://github.com/sanger-tol/nf-core-modules.git patch cram_map_illumina_hic                                             (nextflow)


                                          ,--./,-.
          ___     __   __   __   ___     /,-._.--~\
    |\ | |__  __ /  ` /  \ |__) |__         }  {
    | \| |       \__, \__/ |  \ |___     \`-._,-`-,
                                          `._,._,'

    nf-core/tools version 3.5.2 - https://nf-co.re


ERROR    'helloWorld'

Command used and terminal output

(here the function being included is called `deepClone()`) - verbose output: https://pastebin.com/tVd1Dm5E

System information

No response

Start with the nf-core subworkflows ... patch entry point and reproduce the failure using an included Nextflow function such as helloWorld() or deepClone(). Trace the config-parsing path that raises the function name error; done means patching the existing subworkflow succeeds when it includes and calls a function.