--empty-template flag not producing fully empty module template
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bug
modules
template
- Dominant language
- Python
- Stars
- 322
- Forks
- 255
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 5
Description
Description of the bug
After executing nf-core modules create <tool_name> --empty-template TODOs are still there in main.nf.test and environment.yml. Also the meta.yml is getting generated with an older weird format for descriptions wher ethe last ] would skip to the next line.
Command used and terminal output
nf-core modules create <tool_name> --empty-template
// TODO nf-core: Once you have added the required tests, please run the following command to build this file:
// nf-core modules test pygenprop/info
nextflow_process {
name "Test Process PYGENPROP_INFO"
script "../main.nf"
process "PYGENPROP_INFO"
tag "modules"
tag "modules_nfcore"
tag "pygenprop"
tag "pygenprop/info"
// TODO nf-core: Change the test name preferably indicating the test-data and file-format used
input:
- - meta:
type: map
description: Groovy Map containing sample information. e.g. `[ id:'sample1'
]`
System information
Shouldn't be required
Contributor guide
First steps
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- Open a pull request that references the issue number.
Research direction
Reproduce nf-core modules create <tool_name> --empty-template and inspect the generated main.nf.test, environment.yml, and meta.yml files. The fix is complete when the empty template contains no TODOs and the meta.yml description uses the expected formatting; verify the generated output against the reported example.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- cli, tooling
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100