`nf-core subworkflows lint <name> --local` does not work for subworkflows in `subworkflows/local`
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bug
- Dominant language
- Python
- Stars
- 322
- Forks
- 255
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 5
Description
Description of the bug
nf-core subworkflows lint --local lints all local subworkflows.
nf-core subworkflows lint <subworkflowname> --local however does not work and raises an error that the specified subworkflow cannot be found.
Command used and terminal output
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by tracing the nf-core subworkflows lint <subworkflowname> --local CLI path and compare it with the existing nf-core subworkflows lint --local path. Reproduce the reported not-found error, then verify that naming a subworkflow in subworkflows/local lints that subworkflow successfully.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- cli
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100