nf-core / nf-core/tools

no test_full profile fails the download CI

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#3,979 1 comment 0 reactions 0 assignees View on GitHub

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enhancement
Dominant language
Python
Stars
322
Forks
255
Avg merge
2d 3h
Merged PRs (30d)
5

Description

Description of the bug

This is the command that is run:

nextflow inspect -format json -profile singularity,test,test_full pipeline/main.nf

but no test_full profile are available on that particular pipeline.

any way we could configure the nextflow inspect command to make it more modular on the actual profiles to check?

Command used and terminal output

System information

No response

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First steps

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Research direction

Start by running nextflow inspect -format json -profile singularity,test,test_full pipeline/main.nf and inspect how the download CI selects profiles for pipeline/main.nf. Determine how profile availability can be discovered or configured without assuming test_full; done means the download CI succeeds for pipelines that lack that profile.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
ci-cd, tooling
Issue type
Feature
Difficulty
4/5
Estimated time
3-5 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
25/100

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