Expand specifying toolkit only to run lint/test across all subcommands
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 322
- Forks
- 255
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 5
Description
Description of feature
In this PR https://github.com/nf-core/tools/pull/3608/files functionality was added to specify the parent toolkit name and then bump-versins is applied to all modules under that directory (e.g. bwa to bump versions across bwa/aln bwa/mem bwa/index etc).
It would be nice to extend this to nf-core subcommands lint and test too.
See slack: https://nfcore.slack.com/archives/CE5LG7WMB/p1757580849318169
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reviewing the toolkit-wide version behavior from PR 3608, then locate the nf-core lint and test subcommands. Extend parent-toolkit selection to cover all modules beneath it for both commands, and verify that linting and testing run across the selected child modules.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- cli, testing-qa
- Issue type
- Feature
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 48/100