Havin an ssh remote for modules fails linting
Open
Nobody has claimed this yet.
bug
linting
- Dominant language
- Python
- Stars
- 322
- Forks
- 255
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 5
Description
Description of the bug
When I have this in my modules.json git@github.com:XXX/modules.git, it fails linting.
Switching it to https https://github.com/XXX/modules.git solves that issue.
Command used and terminal output
$ nf-core pipelines lint
modules_json: Your modules.json file is outdated. It will be automatically generated by running any module command.
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the nf-core pipelines lint entry point and the handling of the modules.json remote shown in the report. Reproduce the lint with the SSH URL, compare it with the HTTPS URL, and verify that a valid SSH remote no longer produces the outdated-modules result.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- git, python
- Domain
- tooling
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100