lint fix not working with "*.sam"
Open
Nobody has claimed this yet.
bug
- Dominant language
- Python
- Stars
- 322
- Forks
- 255
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 5
Description
Description of the bug
nf-core -v modules lint --fix samtools/fixmate works with pattern: "*.{sam}" but not with pattern: "*.sam"
Command used and terminal output
System information
No response
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start with the nf-core -v modules lint --fix samtools/fixmate entry point and trace how lint-fix handles the *.sam pattern versus *.{sam}. Reproduce both forms and confirm that the plain *.sam form works without changing the existing brace-pattern behavior.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- tooling
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100