nf-core pipelines launch CLI issue
Nobody has claimed this yet.
- Dominant language
- Python
- Stars
- 322
- Forks
- 255
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 5
Description
Description of the bug
Hi everyone,
When trying to use the nf-core pipelines launch from the command line, I get the following error
nf_core_launch_pipelines_error.txt
Command used and terminal output
nf-core pipelines launch > Remote pipeline > rnaseq > dev (or more stable version) > Command line
System information
Nextflow version:
N E X T F L O W
version 24.04.4 build 5917
created 01-08-2024 07:05 UTC
cite doi:10.1038/nbt.3820
http://nextflow.io
Laptop (Macbook Air M2 15"), local executor (although N/A in this case), macOS sequoia 15.0.1., nf-core version 3.0.2., Python 3.11.2
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing the nf-core pipelines launch flow for the remote rnaseq pipeline, using the command-line option and the reported Nextflow, nf-core, Python, and macOS versions. Read nf_core_launch_pipelines_error.txt for the actual traceback; done means identifying and fixing the launch failure and confirming the command-line flow works.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- cli
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 30/100