Comment in 'nf-core create-params-file --show-hidden' indicates hidden parameters are missing. Params are there
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bug
- Dominant language
- Python
- Stars
- 322
- Forks
- 255
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 5
Description
Description of the bug
Running nf-core create-params-file --show-hidden for nf-core/sarek creates a yml file that still lists:
## (1 hidden parameters are not shown)
etc. . The aparams itself seem to all be there.
See attached yml file
nf-params.yml.txt
Command used and terminal output
nf-core create-params-file --show-hidden nf-core/sarek
System information
tools: 2.14.1
Contributor guide
First steps
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Research direction
Start by reproducing nf-core create-params-file --show-hidden nf-core/sarek with nf-core tools 2.14.1 and compare the generated file with the attached nf-params.yml.txt. Trace how the CLI calculates and renders the hidden-parameter count; done means --show-hidden no longer reports parameters as missing when they are present.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- cli
- Issue type
- Bug
- Difficulty
- 2/5
- Estimated time
- 1-3 hours
- Activity status
- Stale
- Clarity
- Mostly clear
- Newbie friendliness
- 45/100