nf-core / nf-core/tools

modules linting: Check that version.yml has version of all items in `environment.yml`

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linting modules
Dominant language
Python
Stars
322
Forks
255
Avg merge
2d 3h
Merged PRs (30d)
5

Description

Description of feature

see https://github.com/nf-core/modules/blob/master/modules/nf-core/checkqc/main.nf for a module where this is not the case. Similar cases can be found with many python modules

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reading modules/nf-core/checkqc/main.nf and comparing its environment.yml with version.yml; then locate the modules linting entry point in nf-core/tools. The check should identify every environment.yml item missing a version in version.yml, including similar Python modules, and pass when all entries are covered.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
devtools
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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