nf-core / nf-core/tools

Print test directory path in output from `nf-core test`

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enhancement
Dominant language
Python
Stars
322
Forks
255
Avg merge
2d 3h
Merged PRs (30d)
5

Description

Description of feature

Without adding --verbose, it would be useful for debugging tests to know in which directory, e.g. /home/daluab/dev/nf-core-modules/.nf-test/tests/67482518f39b56231161829f7a309e86, a test was executed.

See discussion here: https://nfcore.slack.com/archives/CE5LG7WMB/p1723033856528159

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start at the implementation of the nf-core test command and trace where the test execution directory is known. Update the normal output so it includes that directory without requiring --verbose, then verify that running the command displays the path shown in the issue.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
48/100

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