nf-core / nf-core/tools

Improve error message when modules directory is not empty

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bug
Dominant language
Python
Stars
322
Forks
255
Avg merge
2d 3h
Merged PRs (30d)
5

Description

Description of the bug

https://nfcore.slack.com/archives/CE5LG7WMB/p1715773721298559

Command used and terminal output
nf-core modules install samtools/index
System information

No response

Contributor guide

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First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by reproducing nf-core modules install samtools/index and trace the CLI handling for a non-empty modules directory. Determine what condition currently produces the error and update the message so it clearly explains the problem and expected next step; confirm the command reports the improved wording.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli
Issue type
Bug
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
35/100

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