nf-core lint failing for mismatching assets/sendmail_template.txt
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- Dominant language
- Python
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Description
Description of the bug
I am trying to merge in the template update after the latest 2.12 release into nf-core/fetchngs and nf-core lint is failing with:
╭─ [✗] 1 Pipeline Test Failed ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╮
│ │
│ files_unchanged: assets/sendmail_template.txt does not match the template │
│ │
╰─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────╯
╭───────────────────────╮
│ LINT RESULTS SUMMARY │
├───────────────────────┤
│ [✔] 179 Tests Passed │
│ [?] 9 Tests Ignored │
│ [!] 6 Test Warnings │
│ [✗] 1 Test Failed │
╰───────────────────────╯
This file is intentionally different and I have already added the block below to .nf-core.yml as you can see here which should exclude this file from being linted but still seeing the failure:
files_unchanged:
- assets/sendmail_template.txt
Cloning the branch on the PR above and running nf-core lint with the latest version should reproduce the issue locally too.
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First steps
- Read the whole issue, then the project's contributing guide.
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- Open a pull request that references the issue number.
Research direction
Reproduce the failure by cloning the branch from PR 257 and running the latest nf-core lint. Inspect .nf-core.yml and the files_unchanged check for assets/sendmail_template.txt. Done means the intentionally modified file is excluded and the lint run no longer reports it as a failure.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- tooling
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Clearly specified
- Newbie friendliness
- 35/100