nf-core / nf-core/tools

Document the structure/schema of .nf-core.yml

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documentation enhancement
Dominant language
Python
Stars
322
Forks
255
Avg merge
2d 3h
Merged PRs (30d)
5

Description

Description of feature

The .nf-core.yml file can now contain several sections of settings and information for a repo.
We should look to maintain documentation and/or a schema to make it easier to parse and check for users.

Thoughts:

  • Schema for full yaml spec in python are not geat
  • Could restrict to subset of YAML which is also valid JSON
  • If not using a schema it would be good to make the documentation easily accessible at the CLI still

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by inventorying the sections currently supported in .nf-core.yml and reviewing how nf-core exposes information through its CLI. Resolve whether the deliverable is a YAML schema, documentation, or both; done means users can find a complete description and reliably parse or validate the supported settings.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli, documentation
Issue type
Documentation
Difficulty
5/5
Estimated time
Over a week
Activity status
Stale
Clarity
Needs clarification
Newbie friendliness
30/100

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