Linting message not 100% correct
Open
Nobody has claimed this yet.
bug
infrastructure
- Dominant language
- Python
- Stars
- 322
- Forks
- 255
- Avg merge
- 2d 3h
- Merged PRs (30d)
- 5
Description
Description of the bug
Lint error says I have to update Samtools:
However, the conda handle has two different recipes listed:
Command used and terminal output
nf-core lint
(on latest smrnaseq pr that adds fastp functionality)
System information
Independent of all of this
nf-core/tools 2.6
Contributor guide
First steps
- Read the whole issue, then the project's contributing guide.
- Comment on the issue to say you are picking it up — it saves two people doing the same work.
- Fork the repository and make your change on a branch.
- Open a pull request that references the issue number.
Research direction
Start by reproducing nf-core lint with the latest smrnaseq PR that adds fastp functionality, using nf-core/tools 2.6 or the current equivalent. Inspect how the linter resolves conda handles when multiple Samtools recipes are listed; done means the lint message identifies the correct recipe or clearly explains the required update.
Written by the indexing model from the issue text.
Assessment
- Tech stack
- python
- Domain
- tooling
- Issue type
- Bug
- Difficulty
- 3/5
- Estimated time
- 1-2 days
- Activity status
- Stale
- Clarity
- Needs clarification
- Newbie friendliness
- 35/100