nf-core / nf-core/tools

Download: Specify config location

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command line tools download enhancement infrastructure
Dominant language
Python
Stars
322
Forks
255
Avg merge
2d 3h
Merged PRs (30d)
5

Description

Description of feature

It would be good to be able to specify a path to download configs to. That way, repeated downloads of pipeline releases can overwrite a central location of the configs each time, meaning that they stay up to date.

This is needed for UPPMAX module load nf-core-pipelines because old versions of pipelines have stale versions of nf-core/configs, which causes problems when Nextflow is updated.

Contributor guide

Open the contributing guide

First steps

  1. Read the whole issue, then the project's contributing guide.
  2. Comment on the issue to say you are picking it up — it saves two people doing the same work.
  3. Fork the repository and make your change on a branch.
  4. Open a pull request that references the issue number.

Research direction

Start by locating the existing download workflow in nf-core/tools and determine how pipeline release configs are currently selected and written. Define how an optional destination path should interact with repeated downloads and existing files, then add coverage for downloading into a central location. The issue provides no file or test names, so the relevant command and test structure must be found first.

Written by the indexing model from the issue text.

Assessment

Tech stack
python
Domain
cli
Issue type
Feature
Difficulty
3/5
Estimated time
1-2 days
Activity status
Stale
Clarity
Mostly clear
Newbie friendliness
35/100

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